PUBLICATIONS
This is the list of publications already published by the OBAMA-NEXT project
1.
Martinetto, P., Alberti, J., Becherucci, M. E., Cebrian, J., Iribarne, O., Marbà, N., Montemayor, D., Sparks, E., Ward, R. (2023). The blue carbon of southern southwest Atlantic salt marshes and their biotic and abiotic drivers. Nature Communications 14:8500, https://doi.org/10.1038/s41467-023-44196-w
2.
De la Cruz, A., Pereira, J. M., Paiva, V. H., Ramos, J. A., Oliveira, N., Alonso, H., Saavedra, C., Vázquez, J. A., García-Barón, I., Arcos, J. M., Arroyo, G. M. (2023). Using long-term data series to design adequate protected areas that ensure the conservation of inconspicuous small petrel species. Journal of Applied Ecology, 60:2586-2601 https://doi.org/10.1111/1365-2664.14524
3.
Huggett, J. A., Noyon, M., Carstensen, J., Walker, D. R. (2023). Patterns in the plankton – Spatial distribution and long-term variability of copepods on the Agulhas Bank. Deep-sea Research Part II. 208: 105265 https://doi.org/10.1016/j.dsr2.2023.105265
4.
Bilik, S., Batrakhanov, D., Eerola, T., Haraguchi, L., Kraft, K., Van den Wyngaert, S., Kangas, J., Sjoqvlst, C., Madsen, K., Lens, L., Kalvalnen, H., Horak, K. (2023). Toward phytoplankton parasite detection using autoencoders. Machine Vision and Applications, 34:101 https://doi.org/10.1007/s00138-023-01450-x
5.
Hoegh-Guldberg, O., Northrop, E., Ashford, O. S., Chopin, T., Cross, J., Quesada, C. M. D. (…) Tyedmers, P. (2023). The ocean as a solution to climate change: Updated opportunities for action. Special Report. Washington, DC: World Resources Institute. Available online at https://oceanpanel.org/publication/ocean-solutions-to-climate-change. https://doi.org/10.69902/98e3de92
6.
Yunev, O., Carstensen, J., Suslin, V., Belokopytov, V., Moncheva, S., Stelmakh, L. (…) Vlas, O. (2024). Temporal variability of coccolithophore Emiliania huxleyi blooms in the open Black Sea: Evaluation by satellite data (1998–2020). Deep Sea Research Part I: Oceanographic Research Papers, 208, 104304. https://doi.org/10.1016/j.dsr.2024.104304
7.
Ferrer, L., Sagarminaga, Y., Borja, A., Nogues, M., Alegre, M. J., Santos, M., Boyra, G., Álvarez, P. (…) Rodríguez, J. G. (2024). The Portuguese man-of-war: Adrift in the North Atlantic Ocean. Estuarine, Coastal and Shelf Science, 301: 108732 https://doi.org/10.1016/j.ecss.2024.108732
8.
Pineda, A. F. V., Skov, I. R., Dahy, H., Arsanjani, J. J., Bonnevie, I. M., Børsen, T., Teli, M. (2024) Sustainability Meets Information Technologies: Recent Developments and Future Perspectives. Sustainability 16: 4499 . https://doi.org/10.90/su16114499
9.
Eerola, T., Batrakhanov, D., Barazandeh, N. V., Kraft, K., Haraguchi, L. (…) Kalviainen, H. (2024). Survey of automatic plankton image recognition: challenges, existing solutions and future perspectives. Artificial Intelligence Review, 57: 114 https://doi.org/10.1007/s10462-024-10745-y
10.
Borja, A., Berg, T., Gundersen, H., Hagen, A. G. (…) Uyarra, M.C. (2024). Innovative and practical tools for monitoring and assessing biodiversity status and impacts of multiple human pressures in marine system. Environmental Monitoring and Assessment, 196: 694 https://doi.org/10.1007/s10661-024-12861-2
11.
Kvile, K.Ø., Gundersen, H., Poulsen, R.N., Sample, J.E., Salberg, A.B., Ghareeb, M.E., Buls, T., Bekkby, T., Hancke, K. (2024). Drone and ground-truth data collection, image annotation and machine learning: A protocol for coastal habitat mapping and classification. MethodsX, 13: 102935. https://doi.org/10.1016/j.mex.2024.102935
12.
Taylor, D., Jakobsen, H., Lyngsgaard, M. M., Darecki, M., Werther, M., Maar, M., Saurel, C. (2024). Quantifying bivalve phytoplankton depletion in a eutrophic system: an integrated approach. Limnology and Oceanography, 69(10), 2436-2452. https://doi.org/10.1002/lno.12680
13.
Borja, A., Lanzén, A., Muxika, I. (2024). DNA-based marine benthic assessment methods can perform as morphological ones, but an intercalibration is needed. Ecological Indicators, 167, 112638. https://doi.org/10.1016/j.ecolind.2024.112638
14.
Carstensen, J., Murray, C. J., Lindegarth, M. (2024). Getting the errors right: The importance of partitioning sources of uncertainty for ecological indicators. Ecological Indicators, 167, 112637. https://doi.org/10.1016/j.ecolind.2024.112637
15.
Campese, L., Russo, L., Abagnale, M., Alberti, A., Bachi, G., Balestra, C. (…) Montresor, M. (2024). The NEREA Augmented Observatory: an integrative approach to marine coastal ecology. Scientific Data, 11(1), 989. https://doi.org/10.1038/s41597-024-03787-y
16.
Villarino, E., Lanzen, A., Rodriguez-Ezpeleta, N., Mendibil, I., Borja, A., Muxika, I. (…) Chust, G. (2025). Contrasting diversity patterns using Autonomous Reef Monitoring Structures deployed in pelagic vs. benthic environments. Continental Shelf Research, 285, 105358. https://doi.org/10.1016/j.csr.2024.105358
17.
Di Capua, I., Luise, F., Zampicinini, G., Roncalli, V., Carotenuto, Y., Piredda, R. (2024). Integrative approach to monitoring metazoan diversity and distribution in two Mediterranean coastal sites through morphology and organismal eDNA. Scientific Reports, 14(1), 19291. https://doi.org/10.1038/s41598-024-69520-2
18.
Lazar, L., Spanu, A., Boicenco, L., Oros, A., Damir, N., Bisinicu, E. (…) Korpinen, S. (2024). Methodology for prioritizing marine environmental pressures under various management scenarios in the Black Sea. Frontiers in Marine Science, 11, 1388877. https://doi.org/10.3389/fmars.2024.1388877
19.
Kühn, B., Cayetano, A., Fincham, J. I., Moustahfid, H., Sokolova, M., Trifonova, N. (…) Uusitalo, L. (2025). Machine learning applications for fisheries—at scales from genomics to ecosystems. Reviews in Fisheries Science & Aquaculture, 33(2), 334-357. https://doi.org/10.1080/23308249.2024.2423189
20.
Ramirez-Bal, M., García-Barón, I., Garcia, D., Arcos, J. M., Carrasco, G., Lewin, P. (…) Louzao, M. (2025). Individual migratory patterns of the critically endangered Balearic shearwater: a multi-colony and multi-year study in the NE Atlantic. Global Ecology and Conservation, e03989. https://doi.org/10.2139/ssrn.5022281
21.
Pia, I., Numminen, E., Veneranta, L., Vanhatalo, J. (2025). Spatially Explicit Model to Disentangle Effects of Environment on Annual Fish Reproduction. Environmetrics, 36(2), e2894. https://doi.org/10.1002/env.2894
22.
Virtanen, E. A., Forsblom, L., Saikkonen, L., Jernberg, S., Viitasalo, M., Kulmala, S. (2024). Marine ecosystem extent and condition pilot accounts for Finland. One Ecosystem, 9, e138839. https://doi.org/10.3897/oneeco.9.e138839
23.
van Beest, F. M., Carstensen, J., Dietz, R., Nabe-Nielsen, J., Sveegaard, S., Teilmann, J. (2025). Shifts in habitat suitability for harbour porpoises leads to reduced importance of marine protected areas. Biological Conservation, 302, 111009. https://doi.org/10.1016/j.biocon.2025.111009
24.
Lüskow, F., Knudsen, S. W. (2025). Genetic structure of invasive ctenophore Mnemiopsis leidyi populations in temperate northern European waters is consistent with a southern North Sea overwintering refuge: F. Lüskow, SW Knudsen. Biological Invasions, 27(2), 80. https://doi.org/10.1007/s10530-025-03531-6
25.
Anabitarte, A., Astarloa, A., Garcia-Barón, I., Valle, M., Chust, G., Galparsoro, I. (…) Fernandes-Salvador, J. A. (2025). The use of Atlantic seascapes for marine protected areas planning in the context of the marine biological diversity of areas beyond National Jurisdiction agreement. Marine Pollution Bulletin, 214, 117776. https://doi.org/10.1016/j.marpolbul.2025.117776
26.
Krause, J. R., Cameron, C., Arias-Ortiz, A., Cifuentes-Jara, M., Crooks, S., Dahl, M. (…) Fourqurean, J. W. (2025). Global seagrass carbon stock variability and emissions from seagrass loss. Nature Communications, 16(1), 3798. https://doi.org/10.1038/s41467-025-59204-4
27.
Graversen, A. E. L., Lønborg, C., Addamo, A. M., Pedersen, S. G., Chemello, S., Alejo, I. (…) Jensen, D. K. (2025). A marine and salt marsh sediment organic carbon database for European regional seas (EURO-CARBON). Data in brief, 60, 111595. https://doi.org/10.1016/j.dib.2025.111595
28.
Forsblom, L., Jernberg, S., Kuosa, H., Kostamo, K., Gustafsson, C., Virtanen, E. A. (2025). Integrating regulating ecosystem services in marine conservation planning. Aquatic Conservation: Marine and Freshwater Ecosystems, 35(7), e70196. https://doi.org/10.1002/aqc.70196
29.
Trenkel, V. M., Zanni, M. Y., Sint, D., Faillettaz, R., Lorance, P., Albouy, C. (2025). Environmental DNA for Aquatic Monitoring: Impact of Diel Vertical Migration. Environmental DNA, 7(5), e70187. https://doi.org/10.1002/edn3.70187
30.
Bhendarkar, M., Canals, O., Jurado, C., Mendibil, I., Uriarte, A., Borja, A., Rodríguez‐Ezpeleta, N. (2025). Advancing ecological assessment: towards the integration of eDNA metabarcoding into an estuarine fish index. Ecological Indicators, 181, 114464. https://doi.org/10.1016/j.ecolind.2025.114464
31.
Traboni, C., Nocera, A. C., Romano, F., Courboulès, J., Chantzaras, C., Magiopoulos, I. (…) Pitta, P. (2025). Plankton do not care: Minimal effects of ocean liming on plankton growth and grazing in the Eastern Mediterranean. Limnology and Oceanography. https://doi.org/10.1002/lno.70136
32.
Hansen, J. L., Altenburger, A., Haraguchi, L., Carstensen, J., Jakobsen, H. H. (2025). Trophy constrains the temperature effect on ciliate species turnover rates. Ecosphere, 16(5), e70261. https://doi.org/10.1002/ecs2.70261
33.
Yunev, O., Carstensen, J., Suslin, V., Belokopytov, V., Stelmakh, L., Zhuk, E. (2025). Temporal variability of phytoplankton biomass and algae blooms in the open Black Sea. Progress in Oceanography, 103541. https://doi.org/10.1016/j.pocean.2025.103541
34.
Bandara, T., Brugel, S., Lau, D. C. P., Jurgensone, I., Griniene, E., Garbaras, A. (…) Andersson, A. (2025). Blooms of filamentous cyanobacteria reduce zooplankton quality and pelagic food web efficiency. Limnology and Oceanography. https://doi.org/10.1002/lno.70122
35.
Piehl, S., Carstensen, J., Neumann, T., Vock, C. (2025). Predicting historical oxygen deficiency areas in the western Baltic Sea: A multi-model approach. Marine Pollution Bulletin, 221, 118464. https://doi.org/10.1016/j.marpolbul.2025.118464
36.
Miao, Y., Wang, B., Carstensen, J., Li, D., Ma, X., Sun, Q. (…) Chen, J. (2025). Diverging relationships between acidification and hypoxia off the Changjiang Estuary. Journal of Geophysical Research: Oceans, 130(11), e2025JC022675. https://doi.org/10.1029/2025JC022675
37.
Borja, A., Bremner, J., Kopke, K., Gruber, S., Alessandrini, M., Estrela, A. (…) Elliott, M. (2025). Bridging the gap between marine science and policy: communicating for an informed society and decision-making. Frontiers in Communication, 10, 1641970. https://doi.org/10.3389/fcomm.2025.1641970
38.
Gallot, C., Hubert, Z., Haraguchi, L., Aardema, H., Artigas, L. F., Bellaaj Zouari, A. (…) Thyssen, M. (2025). Best practices for optimization of phytoplankton analysis in natural waters using CytoSense flow cytometers. Cytometry Part A, 107(11), 730-744. https://doi.org/10.1002/cyto.a.24964
39.
Dakos, V., Le Vilain, A., Thebault, E., Alcoverro, T., Boada, J., Infantes, E. (…) Apostolaki, E. T. (2025). Carbon storage of seagrass ecosystems may experience tipping points in response to anthropogenic stress-a modeling perspective. Frontiers in Complex Systems, 3, 1534330. https://doi.org/10.3389/fcpxs.2025.1534330
40.
Holbach, A., Stæhr, S. U., Stæhr, P. A. U., Markager, S. (2025). Chlorophyll-a estimations in complex coastal waters from space—A new optimization method by spatially resolved scaling factors. Science of The Total Environment, 1006, 180868. https://doi.org/10.1016/j.scitotenv.2025.180868
41.
Garate, L., Chariton, A. A., Abad‐Recio, I. L., Bissett, A., Lanzén, A. (2025). Contrasting dynamics and biotic association networks in estuarine microbenthic communities along an environmental disturbance gradient. Environmental DNA, 7(4), e70171. https://doi.org/10.1002/edn3.70171
42.
Hubert, Z., Louchart, A. P., Robache, K., Epinoux, A., Gallot, C., Cornille, V. (…) Artigas, L. F. (2025). Decadal changes in phytoplankton functional composition in the Eastern English Channel: possible upcoming major effects of climate change. Ocean Science, 21(2), 679-700. https://doi.org/10.5194/os-21-679-2025
43.
Lavigne, H., Ruddick, K., Vanhellemont, Q., Van der Zande, D., Vansteenwegen. (2025). Detection of Phaeocystis globosa in the Belgian coastal waters with hyperspectral PACE/OCI satellite data. Proceedings of the WHISPER 2025. https://doi.org/10.5281/zenodo.17997571
44.
Li, L. L., Delatre, N., Hubert, Z., Artigas, L. F., Monchy, S. (2025). Environmental variables influence on spatial distribution of bacterial communities across the English Channel in two main productive seasons. Environmental Microbiology Reports, 17(5), e70213. https://doi.org/10.1111/1758-2229.70213
45.
Holbach, A., Stæhr, S. U., Stæhr, P. A. U., Markager, S. (2025). Estimating underwater light attenuation from space–A spectral approach for case 2 marine waters. Science of the Total Environment, 986, 179775. https://doi.org/10.1016/j.scitotenv.2025.179775
46.
Hubert, Z., Artigas, L. F., Li, L. L., Dédécker, C., Monchy, S. (2025). Exploring the Regional Diversity of Eukaryotic Phytoplankton in the English Channel by Combining High‐Throughput Approaches. MicrobiologyOpen, 14(6), e70097. https://doi.org/10.1002/mbo3.70097
47.
Zbawicka, M., Bach, L., Kotta, J., Kaasik, A., Herkül, K., Małachowicz, M., Wenne, R. (2025). Genetic differentiation in Mytilus populations across climatic zones in Greenland. Journal of Biogeography, e70067. https://doi.org/10.1111/jbi.70067
48.
Reke, A., Ruskule, A., Lees, L., Kotta, J., Veidemane, K., Kõivupuu, A. (…) Barboza, F. R. (2025). Linking coastal cultural ecosystem services to human well-being and leisure preferences: insights from the Baltic Sea region. Ecosystems and People, 21(1), 2530103. https://doi.org/10.1080/26395916.2025.2530103
49.
Lukyanova, O., Pouso, S., Borja, Á., Galparsoro, I. (2025). Mapping conservation priorities across benthic and pelagic environments provides actionable management insights: the Bay of Biscay case study. SSRN 5876813. http://dx.doi.org/10.2139/ssrn.5876813
50.
Faith, M. P., Atkinson, A., Heneghan, R. F., Ostle, C., Fernandes-Salvador, J. A., Thompson, M. S. (…) McQuatters-Gollop, A. (2025). Mapping global fisheries climate risks to guide sustainable marine management. bioRxiv, 2025-05. https://doi.org/10.1101/2025.05.07.652593
51.
Kraft, K., Haraguchi, L., Hällfors, H., Suikkanen, S., Ylöstalo, P., Kielosto, S. (…) Seppälä, J. (2025). Monitoring cyanobacteria blooms with complementary measurements–a similar story told using high-throughput imaging, optical sensors, light microscopy, and satellite-based methods. Harmful Algae, 102865. https://doi.org/10.1016/j.hal.2025.102865
52.
Robache, K., Hubert, Z., Gallot, C., Epinoux, A., Louchart, A. P., Facq, J. V. (…) Artigas, L. F. (2025). Multiscale phytoplankton dynamics in a coastal system of the eastern English Channel: the Boulogne-sur-Mer coastal area. Ocean Science, 21(4), 1787-1811. https://doi.org/10.5194/os-21-1787-2025
53.
Dahl, M., Lavery, P. S., Mazarrasa, I., Samper-Villarreal, J., Adame, M. F., Crooks, S. (…) Serrano, O. (2025). Recommendations for strengthening blue carbon science. One Earth, 8(3). https://doi.org/10.1016/j.oneear.2025.101175
54.
Kaurila, K., Kuningas, S., Lappalainen, A., Vanhatalo, J. (2022). Species distribution modeling with expert elicitation and Bayesian calibration. arXiv preprint arXiv:2206.08817. https://doi.org/10.48550/arXiv.2206.08817
55.
Abad-Recio, I. L., Rubel, V., Filker, S., Garate, L., Stoeck, T., Logares, R., Lanzén, A. (2025). The Basque Coast Estuarine Sediment Gene Catalogue. Scientific Data, 12(1), 1909. https://doi.org/10.1038/s41597-025-06163-6
56.
Russo, L., Bellardini, D., Casotti, R., Licandro, P., Mazzocchi, M. G., Murillas, A. (…) D’Alelio, D. (2025). The Spatiotemporal Variability of Marine Plankton Ecosystem Services at the Regional Scale: A Combined Approach Using a Systematic Review and Network Analysis. Sustainability, 17(3), 1182. https://doi.org/10.3390/su17031182
